pdb-tools 对 pdb 的操作工具

pip install pdb-tools

功能代码

cif 格式转 pdb

功能	代码
cif 格式转 pdb	`# cif -> pdb pdb_fromcif AF-A0A009ET65-F1-model_v4.cif > AF-A0A009ET65-F1-model_v4.pdb`
pdb 转 cif 格式	`# pdb -> cif pdb_tocif AF-A0A009ET65-F1-model_v4.pdb > AF-A0A009ET65-F1-model_v4-x.cif`
pdb 进行分割	`# Extracts residues 1 to 10 pdb_selres -1:10 AF-A0A009ET65-F1-model_v4.pdb`

# cif -> pdb
pdb_fromcif AF-A0A009ET65-F1-model_v4.cif > AF-A0A009ET65-F1-model_v4.pdb

pdb 转 cif 格式

# pdb -> cif
pdb_tocif AF-A0A009ET65-F1-model_v4.pdb > AF-A0A009ET65-F1-model_v4-x.cif

pdb 进行分割

# Extracts residues 1 to 10
pdb_selres -1:10 AF-A0A009ET65-F1-model_v4.pdb