Mac 下安装 blastn 命令

公司用到的这个东西,尝试在本机安装一下
更新于: 2022-01-04 07:56:35

安装步骤

  1. 下载地址  https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
  2. 找到 .dmg 的下载包安装,安装
  3. 命令行
❯ which blastn
/usr/local/ncbi/blast/bin/blastn

验证安装情况

❯ blastn -h
USAGE
  blastn [-h] [-help] [-import_search_strategy filename]
    [-export_search_strategy filename] [-task task_name] [-db database_name]
    [-dbsize num_letters] [-gilist filename] [-seqidlist filename]
    [-negative_gilist filename] [-negative_seqidlist filename]
    [-taxids taxids] [-negative_taxids taxids] [-taxidlist filename]
    [-negative_taxidlist filename] [-entrez_query entrez_query]
    [-db_soft_mask filtering_algorithm] [-db_hard_mask filtering_algorithm]
    [-subject subject_input_file] [-subject_loc range] [-query input_file]
    [-out output_file] [-evalue evalue] [-word_size int_value]
    [-gapopen open_penalty] [-gapextend extend_penalty]
    [-perc_identity float_value] [-qcov_hsp_perc float_value]
    [-max_hsps int_value] [-xdrop_ungap float_value] [-xdrop_gap float_value]
    [-xdrop_gap_final float_value] [-searchsp int_value]
    [-sum_stats bool_value] [-penalty penalty] [-reward reward] [-no_greedy]
    [-min_raw_gapped_score int_value] [-template_type type]
    [-template_length int_value] [-dust DUST_options]
    [-filtering_db filtering_database]
    [-window_masker_taxid window_masker_taxid]
    [-window_masker_db window_masker_db] [-soft_masking soft_masking]
    [-ungapped] [-culling_limit int_value] [-best_hit_overhang float_value]
    [-best_hit_score_edge float_value] [-subject_besthit]
    [-window_size int_value] [-off_diagonal_range int_value]
    [-use_index boolean] [-index_name string] [-lcase_masking]
    [-query_loc range] [-strand strand] [-parse_deflines] [-outfmt format]
    [-show_gis] [-num_descriptions int_value] [-num_alignments int_value]
    [-line_length line_length] [-html] [-sorthits sort_hits]
    [-sorthsps sort_hsps] [-max_target_seqs num_sequences]
    [-num_threads int_value] [-mt_mode int_value] [-remote] [-version]

DESCRIPTION
   Nucleotide-Nucleotide BLAST 2.12.0+

Use '-help' to print detailed descriptions of command line arguments